sorry for the very long delay, I could not find the time to continue the work on my project with Eigen.
The matrix view/proxy works quite well (addressing of elements via two lists of indices). I only have still one problem. I want to hide the creation of a 
But it seems that this does not work .. for instance cout<<getView() 
gives me an exception in malloc.
template<typename MatrixType, typename RowType, typename ColType> class MatrixView
: public MatrixBase<MatrixView<MatrixType, RowType, ColType> >
{
	public:
		EIGEN_GENERIC_PUBLIC_INTERFACE(IndirectMatrix)
		inline IndirectMatrix(const MatrixType& matrix, const RowType &rows, const ColType &cols)
			: m_matrix(matrix), m_rows(rows), m_cols(cols)
		{
			//std::cout << "Debug: " << m_rows.minCoeff() << "," << m_rows.maxCoeff() << "," << matrix.rows() << std::endl;
			//std::cout << "Debug: " << m_cols.minCoeff() << "," << m_cols.maxCoeff() << "," << matrix.cols() << std::endl << matrix << std::endl << m_matrix << std::endl;
			ei_assert(m_rows.minCoeff() >= 0 && m_rows.maxCoeff() < matrix.rows()
					&& m_cols.minCoeff() >= 0 && m_cols.maxCoeff() < matrix.cols());
		}
		EIGEN_INHERIT_ASSIGNMENT_OPERATORS(IndirectMatrix)
		inline int rows() const { return m_rows.rows(); }
		inline int cols() const { return m_cols.rows(); }
		inline Scalar& coeffRef(int row, int col)
		{
			return m_matrix.const_cast_derived().coeffRef(m_rows(row), m_cols(col));
		}
		inline const Scalar coeff(int row, int col) const
		{
			return m_matrix.coeff(m_rows(row), m_cols(col));
		}
	protected:
		const typename MatrixType::Nested m_matrix;
		const typename RowType::Nested m_rows;
		const typename ColType::Nested m_cols;
};